ptolemy.cg.lib.syntactic

Class SyntacticGraph

java.lang.Object

ptolemy.kernel.util.NamedObj

ptolemy.kernel.InstantiableNamedObj

ptolemy.kernel.Entity<T>

ptolemy.kernel.ComponentEntity

ptolemy.kernel.CompositeEntity

ptolemy.cg.lib.syntactic.SyntacticGraph

All Implemented Interfaces:

java.lang.Cloneable, Changeable, Debuggable, DebugListener, Derivable, Instantiable, ModelErrorHandler, MoMLExportable, Moveable, Nameable

public class SyntacticGraph
extends CompositeEntity

Represent ptolemy networks with Syntactic Graphs. Syntactic Graphs represent ptolemy networks in a manner that can be translated to a syntactical representation. In this representative graph, representative nodes can be organized as parallel compositions of nodes in series with feedback drawn around the entire graph.

Since:

Ptolemy II 10.0

Version:

$Id: SyntacticGraph.java 70402 2014-10-23 00:52:20Z cxh $

Author:

Chris Shaver

Accepted Rating:

red

Proposed Rating:

red (shaver)

Nested Class Summary

Nested classes/interfaces inherited from class ptolemy.kernel.CompositeEntity

CompositeEntity.ContainedObjectsIterator

Field Summary

Fields inherited from class ptolemy.kernel.CompositeEntity

_levelCrossingLinks

Fields inherited from class ptolemy.kernel.util.NamedObj

_changeListeners, _changeLock, _changeRequests, _debugging, _debugListeners, _deferChangeRequests, _elementName, _isPersistent, _verbose, _workspace, ATTRIBUTES, CLASSNAME, COMPLETE, CONTENTS, DEEP, FULLNAME, LINKS

Constructor Summary

Constructors

Constructor and Description
SyntacticGraph() Create new instance of SyntacticGraph with no container.
SyntacticGraph(CompositeEntity container, java.lang.String name) Construct an instance of SyntacticGraph in a given container.
SyntacticGraph(Workspace workspace) Create new instance of SyntacticGraph in a given workspace.

Method Summary

Modifier and Type	Method and Description
protected void	_addExteriorNode(SyntacticNode node) Add node that represents an exterior port.
protected void	_addRepresentativeNode(SyntacticNode node) Add representative SyntacticNode to graph and associated maps.
protected void	_clearMarked() Clear all the visited flags in the nodes.
protected void	_clearVisited() Clear all the visited flags in the nodes.
protected java.lang.Integer	_getInputChannel(Port oport, int ochan, Port iport) Get the input channel connected to in a given port from a given output port and channel.
protected java.util.LinkedList<SyntacticNode>	_getInputs() Get list of input ports for model.
protected java.lang.Integer	_getOutputChannel(Port oport, Port iport, int ichan) Get the output channel connected to in a given port from a given input port and channel.
protected java.util.LinkedList<SyntacticNode>	_getOutputs() Get list of output ports for model.
protected java.util.Collection<SyntacticNode>	_getRootSet() Get the set of initial nodes as a Collection.
protected void	_makeConnection(SyntacticPort out, SyntacticPort in) Make connection between SyntacticPorts in Syntactic Nodes.
protected void	_removeConnection(SyntacticPort port) Remove connection from SyntacticPorts in Syntactic Nodes.
java.lang.String	addLabelFromNode(SyntacticNode node) Add a unique label to given node or return its current label.
void	addNode(Entity entity) Add entity to the syntactic graph wrapping with syntactic node.
void	addNode(SyntacticNode node) Add a SyntacticNode to the Graph.
void	addNode2(Entity entity) Add entity to the syntactic graph wrapping with syntactic node.
boolean	build(CompositeEntity model) Build the syntactic graph from the given model.
java.lang.String	description(java.lang.String prefix, java.lang.String suffix) Print description of Syntactic Graph.
java.lang.String	generateCode() Generate code for model represented by graph.
java.lang.String	getLabelFromNode(SyntacticNode node) Get the label associated with a give node.
SyntacticNode	getNodeFromLabel(java.lang.String label) Get the node associated with a given label or null.
void	insertPermutations() Insert permutation objects between columns.
boolean	isBijective() Determine whether the graph has been made completely bijective.
boolean	isFeedbackRemoved() Determine whether feedback has been removed.
void	layoutGraph() Layout graph for display in columns.
void	makeBijective() Make SyntacticGraph bijective by adding pure nodes.
void	removeFeedback() Remove feedback from graph and draw connections out to periphery.
static java.lang.String	stringJoin(java.util.List<java.lang.String> stringList, java.lang.String infix) Join a list of strings with a given infix.
void	structure() Structure the graph into columns.

Methods inherited from class ptolemy.kernel.CompositeEntity

_addEntity, _addRelation, _adjustDeferrals, _containedDecorators, _deepOpaqueEntityList, _description, _exportMoMLContents, _finishedAddEntity, _removeEntity, _removeRelation, _validateSettables, allAtomicEntityList, allowLevelCrossingConnect, classDefinitionList, clone, connect, connect, containedObjectsIterator, deepCompositeEntityList, deepEntityList, deepGetEntities, deepNamedObjList, deepOpaqueEntityList, deepRelationSet, entityList, entityList, exportLinks, exportMoML, getAttribute, getEntities, getEntity, getPort, getRelation, getRelations, isAtomic, isOpaque, lazyAllAtomicEntityList, lazyAllCompositeEntityList, lazyAllCompositeTransparentAndOpaqueEntityList, lazyClassDefinitionList, lazyDeepEntityList, lazyEntityList, lazyRelationList, newRelation, numberOfEntities, numberOfRelations, numEntities, numRelations, relationList, removeAllEntities, removeAllRelations, setClassDefinition, setContainer, statistics, uniqueName

Methods inherited from class ptolemy.kernel.ComponentEntity

_checkContainer, _getContainedObject, _propagateExistence, getContainer, instantiate, moveDown, moveToFirst, moveToIndex, moveToLast, moveUp, newPort, propagateExistence, setName

Methods inherited from class ptolemy.kernel.Entity

_addPort, _removePort, connectedPortList, connectedPorts, connectionsChanged, getPorts, linkedRelationList, linkedRelations, portList, removeAllPorts

Methods inherited from class ptolemy.kernel.InstantiableNamedObj

_setParent, getChildren, getElementName, getParent, getPrototypeList, isClassDefinition, isWithinClassDefinition

Methods inherited from class ptolemy.kernel.util.NamedObj

_addAttribute, _adjustOverride, _attachText, _cloneFixAttributeFields, _copyChangeRequestList, _debug, _debug, _debug, _debug, _debug, _executeChangeRequests, _getIndentPrefix, _isMoMLSuppressed, _markContentsDerived, _notifyHierarchyListenersAfterChange, _notifyHierarchyListenersBeforeChange, _propagateValue, _removeAttribute, _splitName, _stripNumericSuffix, addChangeListener, addDebugListener, addHierarchyListener, attributeChanged, attributeDeleted, attributeList, attributeList, attributeTypeChanged, clone, decorators, deepContains, depthInHierarchy, description, description, event, executeChangeRequests, exportMoML, exportMoML, exportMoML, exportMoML, exportMoMLPlain, getAttribute, getAttributes, getChangeListeners, getClassName, getDecoratorAttribute, getDecoratorAttributes, getDerivedLevel, getDerivedList, getDisplayName, getFullName, getModelErrorHandler, getName, getName, getSource, handleModelError, isDeferringChangeRequests, isOverridden, isPersistent, lazyContainedObjectsIterator, message, notifyOfNameChange, propagateValue, propagateValues, removeAttribute, removeChangeListener, removeDebugListener, removeHierarchyListener, requestChange, setClassName, setDeferringChangeRequests, setDerivedLevel, setDisplayName, setModelErrorHandler, setPersistent, setSource, sortContainedObjects, toplevel, toString, validateSettables, workspace

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ptolemy.kernel.util.Derivable

getDerivedLevel, getDerivedList, propagateValue

Methods inherited from interface ptolemy.kernel.util.Nameable

description, getDisplayName, getFullName, getName, getName

Constructor Detail

SyntacticGraph

public SyntacticGraph()

Create new instance of SyntacticGraph with no container.

SyntacticGraph

public SyntacticGraph(Workspace workspace)

Create new instance of SyntacticGraph in a given workspace.

Parameters:

workspace - Workspace in which to create the syntactic graph.

SyntacticGraph

public SyntacticGraph(CompositeEntity container,
                      java.lang.String name)
               throws IllegalActionException,
                      NameDuplicationException

Construct an instance of SyntacticGraph in a given container.

Parameters:

container - The container entity.

name - The name of the entity.

Throws:

IllegalActionException - If the entity cannot be contained by the proposed container.

NameDuplicationException - If the name coincides with an entity already in the container.

Method Detail

build

public boolean build(CompositeEntity model)
              throws IllegalActionException,
                     NameDuplicationException

Build the syntactic graph from the given model. Model is constructed by going through the total set of steps necessary to establish a representative graph:

      -- add entities to graph,
      -- make graph bijective,
      -- remove feedback loops,
      -- order graph topologically,
      -- insert permutation operators,
      -- add layout information to display
         generated graph.
  

Parameters:

model - Model to represent with graph.

Returns:

whether graph was successively produced.

Throws:

IllegalActionException - If thrown while adding a node, making Bijective, removing feedback, setting the structure, inserting permutations or laying out the graph

NameDuplicationException - If thrown while adding a node, making Bijective, removing feedback, setting the structure, inserting permutations or laying out the graph

addNode2

public void addNode2(Entity entity)
              throws IllegalActionException,
                     NameDuplicationException

Add entity to the syntactic graph wrapping with syntactic node. Beginning of an alternative. Not currently used.

Parameters:

entity - Entity to add to the graph.

Throws:

IllegalActionException - If thrown while creating a new SyntacticNode or adding an entity.

NameDuplicationException - If thrown while creating a new SyntacticNode or adding an entity.

addNode

public void addNode(Entity entity)
             throws IllegalActionException,
                    NameDuplicationException

Add entity to the syntactic graph wrapping with syntactic node.

Parameters:

entity - Entity to add to the graph.

Throws:

IllegalActionException - If thrown while creating a new SyntacticNode or adding an entity.

NameDuplicationException - If thrown while creating a new SyntacticNode or adding an entity.

addNode

public void addNode(SyntacticNode node)
             throws IllegalActionException,
                    NameDuplicationException

Add a SyntacticNode to the Graph. Nodes are either purely syntactic nodes or nodes that represent Entities.

Parameters:

node - Node to add to the Graph.

Throws:

IllegalActionException - on attempts to add nodes after certain transformations are done to the graph.

NameDuplicationException - if duplicate names are used.

makeBijective

public void makeBijective()
                   throws IllegalActionException,
                          NameDuplicationException

Make SyntacticGraph bijective by adding pure nodes. Pure nodes are added to mediate multiply connected nodes.

Throws:

IllegalActionException - If thrown while creating a SyntacticNode, setting a Mediator, removing a connection or adding a connection.

NameDuplicationException - If thrown while creating a SyntacticNode, setting a Mediator, removing a connection or adding a connection.

removeFeedback

public void removeFeedback()
                    throws IllegalActionException,
                           NameDuplicationException

Remove feedback from graph and draw connections out to periphery. This can only be done when the graph is bijective, though this might still work with more constraints given a multiply connected graph.

Throws:

IllegalActionException

NameDuplicationException

structure

public void structure()
               throws IllegalActionException,
                      NameDuplicationException

Structure the graph into columns. This transformation imposes a partial order on the acyclic graph.

Throws:

IllegalActionException

NameDuplicationException

insertPermutations

public void insertPermutations()
                        throws IllegalActionException,
                               NameDuplicationException

Insert permutation objects between columns.

Throws:

IllegalActionException

NameDuplicationException

layoutGraph

public void layoutGraph()
                 throws IllegalActionException,
                        NameDuplicationException

Layout graph for display in columns.

Throws:

IllegalActionException

NameDuplicationException

generateCode

public java.lang.String generateCode()

Generate code for model represented by graph.

Returns:

code generated from syntactic graph.

isFeedbackRemoved

public boolean isFeedbackRemoved()

Determine whether feedback has been removed. Feedback is transformed into named pairs of initial and terminal syntactic nodes.

Returns:

Whether feedback has been removed.

isBijective

public boolean isBijective()

Determine whether the graph has been made completely bijective. Multiple relations are either removed in the nodes by repeating multivalent ports as series of single ports, or removed in the graph by representing splits and merges as purely syntactic nodes.

Returns:

Whether graph has been made bijective.

description

public java.lang.String description(java.lang.String prefix,
                                    java.lang.String suffix)

Print description of Syntactic Graph.

Parameters:

prefix - Line prefix for embedding description

suffix - Line suffix for embedding description

Returns:

Description of Syntactic Graph.

getNodeFromLabel

public SyntacticNode getNodeFromLabel(java.lang.String label)

Get the node associated with a given label or null.

Parameters:

label - The label given for a node.

Returns:

The node associated with the given label or null.

getLabelFromNode

public java.lang.String getLabelFromNode(SyntacticNode node)

Get the label associated with a give node.

Parameters:

node - The node give for a label.

Returns:

The label associated with the given node or null.

addLabelFromNode

public java.lang.String addLabelFromNode(SyntacticNode node)

Add a unique label to given node or return its current label.

Parameters:

node - The node to give a label to.

Returns:

the label given to the node or already attached to it.

stringJoin

public static java.lang.String stringJoin(java.util.List<java.lang.String> stringList,
                                          java.lang.String infix)

Join a list of strings with a given infix.

Parameters:

stringList - List of strings.

infix - Infix to join strings with.

Returns:

String containing joined strings.

_addRepresentativeNode

protected void _addRepresentativeNode(SyntacticNode node)

Add representative SyntacticNode to graph and associated maps. If the node is not representative the node will not be added to the map between entities and nodes.

Parameters:

node - The representative node to add.

_addExteriorNode

protected void _addExteriorNode(SyntacticNode node)

Add node that represents an exterior port. If the node is does not have an exterior port it will not be added to the map between ports and nodes.

Parameters:

node - The representative node to add.

_makeConnection

protected void _makeConnection(SyntacticPort out,
                               SyntacticPort in)
                        throws IllegalActionException

Make connection between SyntacticPorts in Syntactic Nodes.

Parameters:

out - The output port to connect.

in - The input port to connect.

Throws:

IllegalActionException

_removeConnection

protected void _removeConnection(SyntacticPort port)
                          throws IllegalActionException

Remove connection from SyntacticPorts in Syntactic Nodes.

Parameters:

port - The port to disconnect.

Throws:

IllegalActionException

_getInputChannel

protected java.lang.Integer _getInputChannel(Port oport,
                                             int ochan,
                                             Port iport)
                                      throws IllegalActionException

Get the input channel connected to in a given port from a given output port and channel. If no connection is found null is returned.

Parameters:

oport - The output port sending on ochan.

ochan - The output channel for port oport.

iport - The input port whose channel is to be determined.

Returns:

input channel on iport or null.

Throws:

IllegalActionException

_getOutputChannel

protected java.lang.Integer _getOutputChannel(Port oport,
                                              Port iport,
                                              int ichan)
                                       throws IllegalActionException

Get the output channel connected to in a given port from a given input port and channel. If no connection is found null is returned.

Parameters:

oport - The output port sending on ochan.

iport - The input port whose channel is to be determined.

ichan - The input channel for port iport.

Returns:

output channel on oport or null.

Throws:

IllegalActionException

_getRootSet

protected java.util.Collection<SyntacticNode> _getRootSet()

Get the set of initial nodes as a Collection.

Returns:

A Collection containing the initial nodes in the graph.

_clearVisited

protected void _clearVisited()

Clear all the visited flags in the nodes. This is used for visiting algorithms.

_clearMarked

protected void _clearMarked()

Clear all the visited flags in the nodes. This is used for visiting algorithms.

_getInputs

protected java.util.LinkedList<SyntacticNode> _getInputs()

Get list of input ports for model.

Returns:

List of input ports.

_getOutputs

protected java.util.LinkedList<SyntacticNode> _getOutputs()

Get list of output ports for model.

Returns:

List of output ports.